Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISD12_RS24355 Genome accession   NZ_CP063953
Coordinates   5066600..5067196 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain S131-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5061600..5072196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISD12_RS24340 helD 5061808..5063862 (-) 2055 WP_194394722.1 DNA helicase IV -
  ISD12_RS24345 - 5063987..5064433 (+) 447 WP_012542294.1 YccF domain-containing protein -
  ISD12_RS24350 yccS 5064451..5066586 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ISD12_RS24355 sxy/tfoX 5066600..5067196 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISD12_RS24360 sulA 5067547..5068056 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISD12_RS24365 ompA 5068409..5069461 (+) 1053 WP_008805892.1 porin OmpA -
  ISD12_RS24370 matP 5069572..5070024 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISD12_RS24375 - 5070210..5071967 (+) 1758 WP_194394723.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=498118 ISD12_RS24355 WP_012542296.1 5066600..5067196(-) (sxy/tfoX) [Klebsiella variicola strain S131-2]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498118 ISD12_RS24355 WP_012542296.1 5066600..5067196(-) (sxy/tfoX) [Klebsiella variicola strain S131-2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505