Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SSUD12_RS10765 Genome accession   NC_017621
Coordinates   2182093..2182857 (+) Length   254 a.a.
NCBI ID   WP_014638879.1    Uniprot ID   G7SHV5
Organism   Streptococcus suis D12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2177093..2187857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS10725 (SSUD12_2168) - 2177447..2177785 (+) 339 WP_014638876.1 DUF771 domain-containing protein -
  SSUD12_RS10730 (SSUD12_2169) - 2177848..2178969 (+) 1122 WP_014638877.1 site-specific integrase -
  SSUD12_RS10750 (SSUD12_2170) - 2179475..2180158 (-) 684 WP_014638878.1 YoaK family protein -
  SSUD12_RS10755 (SSUD12_2171) rlmH 2180183..2180662 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SSUD12_RS10760 (SSUD12_2172) htrA 2180836..2182032 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  SSUD12_RS10765 (SSUD12_2173) spo0J 2182093..2182857 (+) 765 WP_014638879.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28966.21 Da        Isoelectric Point: 9.1678

>NTDB_id=49809 SSUD12_RS10765 WP_014638879.1 2182093..2182857(+) (spo0J) [Streptococcus suis D12]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGQISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=49809 SSUD12_RS10765 WP_014638879.1 2182093..2182857(+) (spo0J) [Streptococcus suis D12]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGACAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SHV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547

Multiple sequence alignment