Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD25_RS11620 Genome accession   NZ_CP063945
Coordinates   2339357..2339953 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain S166-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2334357..2344953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD25_RS11605 helD 2334565..2336619 (-) 2055 WP_186937194.1 DNA helicase IV -
  IOD25_RS11610 - 2336744..2337190 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IOD25_RS11615 yccS 2337208..2339343 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IOD25_RS11620 sxy/tfoX 2339357..2339953 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD25_RS11625 sulA 2340302..2340811 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD25_RS11630 ompA 2341164..2342240 (+) 1077 WP_032432880.1 porin OmpA -
  IOD25_RS11635 matP 2342372..2342824 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD25_RS11640 - 2343010..2344767 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=498082 IOD25_RS11620 WP_004179217.1 2339357..2339953(-) (sxy/tfoX) [Klebsiella pneumoniae strain S166-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498082 IOD25_RS11620 WP_004179217.1 2339357..2339953(-) (sxy/tfoX) [Klebsiella pneumoniae strain S166-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51