Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IGI31_RS08930 Genome accession   NZ_CP075465
Coordinates   1875019..1875675 (+) Length   218 a.a.
NCBI ID   WP_023281297.1    Uniprot ID   -
Organism   Escherichia coli strain NT1N34     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870019..1880675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI31_RS08900 dcyD 1870899..1871885 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  IGI31_RS08905 tcyL 1871900..1872568 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IGI31_RS08910 tcyN 1872565..1873317 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IGI31_RS08915 sdiA 1873547..1874269 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  IGI31_RS08920 yecF 1874336..1874560 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IGI31_RS08925 yecU 1874547..1874723 (-) 177 WP_001307856.1 protein YecU -
  IGI31_RS08930 letA 1875019..1875675 (+) 657 WP_023281297.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IGI31_RS08935 uvrC 1875672..1877504 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IGI31_RS08940 pgsA 1877561..1878109 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IGI31_RS08960 yecA 1878759..1879424 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23936.71 Da        Isoelectric Point: 6.9614

>NTDB_id=498061 IGI31_RS08930 WP_023281297.1 1875019..1875675(+) (letA) [Escherichia coli strain NT1N34]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=498061 IGI31_RS08930 WP_023281297.1 1875019..1875675(+) (letA) [Escherichia coli strain NT1N34]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGTATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486