Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA55_RS14210 Genome accession   NZ_CP063943
Coordinates   2884260..2884856 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BS329-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879260..2889856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA55_RS14195 helD 2879468..2881522 (-) 2055 WP_009485779.1 DNA helicase IV -
  ISA55_RS14200 - 2881647..2882093 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ISA55_RS14205 yccS 2882111..2884246 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISA55_RS14210 sxy/tfoX 2884260..2884856 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA55_RS14215 sulA 2885205..2885714 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA55_RS14220 ompA 2886067..2887137 (+) 1071 WP_002898408.1 porin OmpA -
  ISA55_RS14225 matP 2887269..2887721 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA55_RS14230 - 2887907..2889664 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=498061 ISA55_RS14210 WP_004179217.1 2884260..2884856(-) (sxy/tfoX) [Klebsiella pneumoniae strain BS329-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498061 ISA55_RS14210 WP_004179217.1 2884260..2884856(-) (sxy/tfoX) [Klebsiella pneumoniae strain BS329-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51