Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SSUD12_RS09910 Genome accession   NC_017621
Coordinates   2008065..2009432 (-) Length   455 a.a.
NCBI ID   WP_014638739.1    Uniprot ID   G7SEN8
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003065..2014432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS09885 (SSUD12_1997) - 2003821..2005101 (-) 1281 WP_014638736.1 MFS transporter -
  SSUD12_RS09890 (SSUD12_1998) - 2005193..2005852 (-) 660 WP_014638737.1 LiaF transmembrane domain-containing protein -
  SSUD12_RS09895 (SSUD12_1999) - 2005857..2006303 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  SSUD12_RS09900 (SSUD12_2000) - 2006481..2007239 (-) 759 WP_002939965.1 TIGR00266 family protein -
  SSUD12_RS09905 (SSUD12_2001) - 2007448..2007942 (-) 495 WP_014638738.1 beta-class carbonic anhydrase -
  SSUD12_RS09910 (SSUD12_2002) radA 2008065..2009432 (-) 1368 WP_014638739.1 DNA repair protein RadA Machinery gene
  SSUD12_RS09915 (SSUD12_2003) - 2009439..2009972 (-) 534 WP_014638740.1 histidine phosphatase family protein -
  SSUD12_RS09920 (SSUD12_2004) - 2009979..2010422 (-) 444 WP_014638741.1 dUTP diphosphatase -
  SSUD12_RS09925 (SSUD12_2005) - 2010451..2010654 (-) 204 WP_148256222.1 hypothetical protein -
  SSUD12_RS09930 (SSUD12_2006) - 2010703..2011572 (-) 870 WP_234944285.1 helix-turn-helix domain-containing protein -
  SSUD12_RS09935 (SSUD12_2008) - 2011909..2012193 (+) 285 WP_014638745.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49873.40 Da        Isoelectric Point: 6.5158

>NTDB_id=49806 SSUD12_RS09910 WP_014638739.1 2008065..2009432(-) (radA) [Streptococcus suis D12]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=49806 SSUD12_RS09910 WP_014638739.1 2008065..2009432(-) (radA) [Streptococcus suis D12]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCGGAAGTCAAAAACGAGCGGGTTAGCCTGACAGGCG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACCAAGACTAACATGGAGGAGTTCAAC
CGCGTCCTTGGTGGTGGCGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAATCGACCCTGCT
CTTACAGGTATCGACTCAGTTGTCCACCATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATTAAGCCAGATTTCTTGATTATCGATTCGATCCAGACCATCATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTATATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGTTTTGGCTCTACCAACGAAATCGGTATTTTTGAAAT
GCAGTCACAGGGCTTGGTTGAAGTTCTCAATCCAAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCGGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTATCTCAAGTCAGCAGGTGGAGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTCGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGAGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SEN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment