Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA61_RS10600 Genome accession   NZ_CP063942
Coordinates   2294904..2295500 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain BS418     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2289904..2300500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA61_RS10580 - 2290024..2291781 (-) 1758 WP_048323579.1 Lon protease family protein -
  ISA61_RS10585 matP 2291967..2292419 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA61_RS10590 ompA 2292623..2293693 (-) 1071 WP_004201430.1 porin OmpA -
  ISA61_RS10595 sulA 2294046..2294555 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  ISA61_RS10600 sxy/tfoX 2294904..2295500 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA61_RS10605 yccS 2295511..2297646 (-) 2136 WP_004201435.1 YccS family putative transporter -
  ISA61_RS10610 - 2297664..2298110 (-) 447 WP_004201437.1 YccF domain-containing protein -
  ISA61_RS10615 helD 2298235..2300289 (+) 2055 WP_194419324.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=498036 ISA61_RS10600 WP_004201433.1 2294904..2295500(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS418]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498036 ISA61_RS10600 WP_004201433.1 2294904..2295500(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS418]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCTTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5