Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IGI31_RS00780 Genome accession   NZ_CP075465
Coordinates   167107..168090 (+) Length   327 a.a.
NCBI ID   WP_193107680.1    Uniprot ID   -
Organism   Escherichia coli strain NT1N34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 162107..173090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI31_RS00765 dppA 163250..164857 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  IGI31_RS00770 dppB 165165..166184 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  IGI31_RS00775 dppC 166194..167096 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  IGI31_RS00780 amiE 167107..168090 (+) 984 WP_193107680.1 dipeptide ABC transporter ATP-binding protein Regulator
  IGI31_RS00785 dppF 168087..169091 (+) 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
  IGI31_RS00790 yhjV 169121..170392 (-) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  IGI31_RS00795 ldrD 170868..170975 (+) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  IGI31_RS00800 bcsG 171062..172741 (-) 1680 WP_000191622.1 cellulose biosynthesis protein BcsG -
  IGI31_RS00805 bcsF 172738..172929 (-) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35874.39 Da        Isoelectric Point: 6.5814

>NTDB_id=498029 IGI31_RS00780 WP_193107680.1 167107..168090(+) (amiE) [Escherichia coli strain NT1N34]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLTSLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=498029 IGI31_RS00780 WP_193107680.1 167107..168090(+) (amiE) [Escherichia coli strain NT1N34]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GACGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(24-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404