Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA62_RS09405 Genome accession   NZ_CP063939
Coordinates   1917189..1917785 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BM343     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912189..1922785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA62_RS09390 helD 1912397..1914451 (-) 2055 WP_004179218.1 DNA helicase IV -
  ISA62_RS09395 - 1914576..1915022 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ISA62_RS09400 yccS 1915040..1917175 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISA62_RS09405 sxy/tfoX 1917189..1917785 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA62_RS09410 sulA 1918134..1918643 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA62_RS09415 ompA 1918996..1920066 (+) 1071 WP_002898408.1 porin OmpA -
  ISA62_RS09420 matP 1920198..1920650 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA62_RS09425 - 1920836..1922593 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=498005 ISA62_RS09405 WP_004179217.1 1917189..1917785(-) (sxy/tfoX) [Klebsiella pneumoniae strain BM343]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498005 ISA62_RS09405 WP_004179217.1 1917189..1917785(-) (sxy/tfoX) [Klebsiella pneumoniae strain BM343]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51