Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA63_RS20010 Genome accession   NZ_CP063936
Coordinates   4152148..4152744 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BS317-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4147148..4157744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA63_RS19990 - 4147340..4149097 (-) 1758 WP_004147851.1 Lon protease family protein -
  ISA63_RS19995 matP 4149283..4149735 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA63_RS20000 ompA 4149867..4150937 (-) 1071 WP_002898408.1 porin OmpA -
  ISA63_RS20005 sulA 4151290..4151799 (-) 510 WP_194445118.1 SOS-induced cell division inhibitor SulA -
  ISA63_RS20010 sxy/tfoX 4152148..4152744 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA63_RS20015 yccS 4152758..4154893 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISA63_RS20020 - 4154911..4155357 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ISA63_RS20025 helD 4155482..4157536 (+) 2055 WP_031590196.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=498001 ISA63_RS20010 WP_004179217.1 4152148..4152744(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS317-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498001 ISA63_RS20010 WP_004179217.1 4152148..4152744(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS317-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51