Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA64_RS20690 Genome accession   NZ_CP063934
Coordinates   4240828..4241424 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BS326-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4235828..4246424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA64_RS20675 helD 4236036..4238090 (-) 2055 WP_009485779.1 DNA helicase IV -
  ISA64_RS20680 - 4238215..4238661 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ISA64_RS20685 yccS 4238679..4240814 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISA64_RS20690 sxy/tfoX 4240828..4241424 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA64_RS20695 sulA 4241773..4242282 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA64_RS20700 ompA 4242635..4243705 (+) 1071 WP_002898408.1 porin OmpA -
  ISA64_RS20705 matP 4243837..4244289 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA64_RS20710 - 4244475..4246232 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497974 ISA64_RS20690 WP_004179217.1 4240828..4241424(-) (sxy/tfoX) [Klebsiella pneumoniae strain BS326-3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497974 ISA64_RS20690 WP_004179217.1 4240828..4241424(-) (sxy/tfoX) [Klebsiella pneumoniae strain BS326-3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51