Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA65_RS24645 Genome accession   NZ_CP063933
Coordinates   5141955..5142551 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BS369-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5136955..5147551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA65_RS24625 - 5137184..5138941 (-) 1758 WP_043875557.1 Lon protease family protein -
  ISA65_RS24630 matP 5139127..5139579 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA65_RS24635 ompA 5139690..5140742 (-) 1053 WP_008805892.1 porin OmpA -
  ISA65_RS24640 sulA 5141095..5141604 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA65_RS24645 sxy/tfoX 5141955..5142551 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA65_RS24650 yccS 5142565..5144700 (-) 2136 WP_008805895.1 YccS family putative transporter -
  ISA65_RS24655 - 5144718..5145164 (-) 447 WP_012542294.1 YccF domain-containing protein -
  ISA65_RS24660 helD 5145289..5147343 (+) 2055 WP_043875556.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497953 ISA65_RS24645 WP_012542296.1 5141955..5142551(+) (sxy/tfoX) [Klebsiella variicola strain BS369-2]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497953 ISA65_RS24645 WP_012542296.1 5141955..5142551(+) (sxy/tfoX) [Klebsiella variicola strain BS369-2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505