Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA66_RS08285 Genome accession   NZ_CP063932
Coordinates   1785374..1785970 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BS375-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780374..1790970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA66_RS08265 - 1780603..1782360 (-) 1758 WP_043875557.1 Lon protease family protein -
  ISA66_RS08270 matP 1782546..1782998 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA66_RS08275 ompA 1783109..1784161 (-) 1053 WP_008805892.1 porin OmpA -
  ISA66_RS08280 sulA 1784514..1785023 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA66_RS08285 sxy/tfoX 1785374..1785970 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA66_RS08290 yccS 1785984..1788027 (-) 2044 Protein_1603 YccS family putative transporter -
  ISA66_RS08295 - 1788045..1788491 (-) 447 WP_012542294.1 YccF domain-containing protein -
  ISA66_RS08300 helD 1788616..1790670 (+) 2055 WP_043875556.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497915 ISA66_RS08285 WP_012542296.1 1785374..1785970(+) (sxy/tfoX) [Klebsiella variicola strain BS375-3]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497915 ISA66_RS08285 WP_012542296.1 1785374..1785970(+) (sxy/tfoX) [Klebsiella variicola strain BS375-3]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505