Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KIB02_RS09795 Genome accession   NZ_CP075374
Coordinates   2001554..2002981 (-) Length   475 a.a.
NCBI ID   WP_096268914.1    Uniprot ID   -
Organism   Escherichia coli strain no107     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996554..2007981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIB02_RS09765 (KIB02_09770) yeeZ 1996609..1997433 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KIB02_RS09770 (KIB02_09775) yeeY 1997479..1998408 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KIB02_RS09775 (KIB02_09780) yoeI 1998623..1998685 (+) 63 WP_010723108.1 membrane protein YoeI -
  KIB02_RS09780 (KIB02_09785) plaP 1998675..2000033 (+) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  KIB02_RS09785 (KIB02_09790) tsuA 2000212..2001270 (+) 1059 WP_001601751.1 thiosulfate utilization transporter TsuA/YeeE -
  KIB02_RS09790 (KIB02_09795) tsuB 2001284..2001511 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KIB02_RS09795 (KIB02_09800) sbcB 2001554..2002981 (-) 1428 WP_096268914.1 exodeoxyribonuclease I Machinery gene
  KIB02_RS09800 (KIB02_09805) dacD 2003170..2004336 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KIB02_RS09805 (KIB02_09810) sbmC 2004455..2004928 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  KIB02_RS09810 (KIB02_09815) yeeA 2005126..2006184 (+) 1059 WP_001200891.1 FUSC family protein -
  KIB02_RS09815 (KIB02_09820) tmaR 2006356..2006685 (+) 330 WP_096268913.1 DUF496 family protein -
  KIB02_RS09820 (KIB02_09825) - 2006786..2007229 (-) 444 WP_001189434.1 EutP/PduV family microcompartment system protein -
  KIB02_RS09825 (KIB02_09830) pduU 2007234..2007584 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54481.75 Da        Isoelectric Point: 5.4700

>NTDB_id=497901 KIB02_RS09795 WP_096268914.1 2001554..2002981(-) (sbcB) [Escherichia coli strain no107]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=497901 KIB02_RS09795 WP_096268914.1 2001554..2002981(-) (sbcB) [Escherichia coli strain no107]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATAGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCACAAGTGCGTGAAAAAGT
GGTGGCAATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCAGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585