Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA67_RS03475 Genome accession   NZ_CP063930
Coordinates   683804..684400 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M186-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 678804..689400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA67_RS03460 helD 679012..681066 (-) 2055 WP_004176653.1 DNA helicase IV -
  ISA67_RS03465 - 681191..681637 (+) 447 WP_021312905.1 YccF domain-containing protein -
  ISA67_RS03470 yccS 681655..683790 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISA67_RS03475 sxy/tfoX 683804..684400 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA67_RS03480 sulA 684749..685258 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ISA67_RS03485 ompA 685611..686681 (+) 1071 WP_002898408.1 porin OmpA -
  ISA67_RS03490 matP 686813..687265 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA67_RS03495 - 687451..689208 (+) 1758 WP_023286206.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497884 ISA67_RS03475 WP_004179217.1 683804..684400(-) (sxy/tfoX) [Klebsiella pneumoniae strain M186-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497884 ISA67_RS03475 WP_004179217.1 683804..684400(-) (sxy/tfoX) [Klebsiella pneumoniae strain M186-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51