Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA69_RS09075 Genome accession   NZ_CP063926
Coordinates   1855892..1856488 (-) Length   198 a.a.
NCBI ID   WP_194392023.1    Uniprot ID   -
Organism   Klebsiella variicola strain S187-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850892..1861488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA69_RS09060 helD 1851100..1853154 (-) 2055 WP_032753960.1 DNA helicase IV -
  ISA69_RS09065 - 1853279..1853725 (+) 447 WP_012542294.1 YccF domain-containing protein -
  ISA69_RS09070 yccS 1853743..1855878 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ISA69_RS09075 sxy/tfoX 1855892..1856488 (-) 597 WP_194392023.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA69_RS09080 sulA 1856839..1857348 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA69_RS09085 ompA 1857701..1858753 (+) 1053 WP_008805892.1 porin OmpA -
  ISA69_RS09090 matP 1858864..1859316 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA69_RS09095 - 1859502..1861259 (+) 1758 WP_094284866.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22657.16 Da        Isoelectric Point: 9.9635

>NTDB_id=497840 ISA69_RS09075 WP_194392023.1 1855892..1856488(-) (sxy/tfoX) [Klebsiella variicola strain S187-1]
MRKLVCPRFPQFQACVSPLGQLYSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497840 ISA69_RS09075 WP_194392023.1 1855892..1856488(-) (sxy/tfoX) [Klebsiella variicola strain S187-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTATATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGTTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505