Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA70_RS20255 Genome accession   NZ_CP063925
Coordinates   4185624..4186220 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain S210-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4180624..4191220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA70_RS20235 - 4180816..4182573 (-) 1758 WP_159211738.1 Lon protease family protein -
  ISA70_RS20240 matP 4182759..4183211 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA70_RS20245 ompA 4183343..4184413 (-) 1071 WP_002898408.1 porin OmpA -
  ISA70_RS20250 sulA 4184766..4185275 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ISA70_RS20255 sxy/tfoX 4185624..4186220 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA70_RS20260 yccS 4186234..4188369 (-) 2136 WP_159211737.1 YccS family putative transporter -
  ISA70_RS20265 - 4188387..4188833 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ISA70_RS20270 helD 4188958..4191012 (+) 2055 WP_004179218.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497836 ISA70_RS20255 WP_004179217.1 4185624..4186220(+) (sxy/tfoX) [Klebsiella pneumoniae strain S210-3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497836 ISA70_RS20255 WP_004179217.1 4185624..4186220(+) (sxy/tfoX) [Klebsiella pneumoniae strain S210-3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51