Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   KIL00_RS12500 Genome accession   NZ_CP075344
Coordinates   2406572..2408062 (-) Length   496 a.a.
NCBI ID   WP_213783405.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2401572..2413062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS12470 (KIL00_12470) gudB 2401726..2403000 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  KIL00_RS12475 (KIL00_12475) mecB 2403156..2403740 (-) 585 WP_003230533.1 genetic competence negative regulator -
  KIL00_RS12480 (KIL00_12480) ypbG 2403899..2404678 (-) 780 WP_014480146.1 metallophosphoesterase -
  KIL00_RS12485 (KIL00_12485) ypbF 2404764..2405207 (-) 444 WP_014480147.1 YpbF family protein -
  KIL00_RS12490 (KIL00_12490) ypbE 2405270..2405992 (-) 723 WP_004398603.1 LysM peptidoglycan-binding domain-containing protein -
  KIL00_RS12495 (KIL00_12495) ypbD 2405943..2406545 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  KIL00_RS12500 (KIL00_12500) recS 2406572..2408062 (-) 1491 WP_213783405.1 ATP-dependent DNA helicase RecQ Machinery gene
  KIL00_RS12505 (KIL00_12505) gmmB 2408055..2409113 (-) 1059 WP_069837606.1 helix-turn-helix domain-containing protein -
  KIL00_RS12510 (KIL00_12510) fer 2409379..2409627 (+) 249 WP_003225461.1 ferredoxin -
  KIL00_RS12515 (KIL00_12515) fmnP 2409667..2410239 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  KIL00_RS12520 (KIL00_12520) serA 2410736..2412313 (+) 1578 WP_046160519.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56450.07 Da        Isoelectric Point: 6.5562

>NTDB_id=497798 KIL00_RS12500 WP_213783405.1 2406572..2408062(-) (recS) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQSAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=497798 KIL00_RS12500 WP_213783405.1 2406572..2408062(-) (recS) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGTCGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

98.992

100

0.99