Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KIL00_RS06840 Genome accession   NZ_CP075344
Coordinates   1315703..1316839 (+) Length   378 a.a.
NCBI ID   WP_213783592.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310703..1321839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS06820 (KIL00_06820) uxaA 1311153..1312646 (+) 1494 WP_069837452.1 altronate dehydratase family protein -
  KIL00_RS06825 (KIL00_06825) yjnA 1312685..1313449 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  KIL00_RS06830 (KIL00_06830) yjoA 1313674..1314138 (-) 465 WP_014479541.1 DinB family protein -
  KIL00_RS06835 (KIL00_06835) yjoB 1314287..1315558 (+) 1272 WP_213783591.1 AAA family ATPase -
  KIL00_RS06840 (KIL00_06840) rapC 1315703..1316839 (+) 1137 WP_213783592.1 tetratricopeptide repeat protein Regulator
  KIL00_RS06845 (KIL00_06845) phrA 1316829..1316963 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  KIL00_RS06850 (KIL00_06850) yjpA 1316994..1317240 (-) 247 Protein_1291 YciI family protein -
  KIL00_RS06855 (KIL00_06855) xlyB 1317361..1318314 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  KIL00_RS06860 (KIL00_06860) yjqA 1318354..1318731 (-) 378 WP_014479546.1 PH domain-containing protein -
  KIL00_RS06865 (KIL00_06865) pghB 1318837..1319439 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  KIL00_RS06870 (KIL00_06870) xpdC 1319516..1320352 (+) 837 WP_003245071.1 manganese catalase family protein -
  KIL00_RS06875 (KIL00_06875) xkdA 1320396..1320992 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  KIL00_RS06880 (KIL00_06880) xre 1321155..1321496 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45027.18 Da        Isoelectric Point: 4.7210

>NTDB_id=497766 KIL00_RS06840 WP_213783592.1 1315703..1316839(+) (rapC) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPHLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=497766 KIL00_RS06840 WP_213783592.1 1315703..1316839(+) (rapC) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCACCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418