Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA74_RS15450 Genome accession   NZ_CP063919
Coordinates   3236761..3237357 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BM337-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231761..3242357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA74_RS15430 - 3231953..3233710 (-) 1758 WP_004147851.1 Lon protease family protein -
  ISA74_RS15435 matP 3233896..3234348 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA74_RS15440 ompA 3234480..3235550 (-) 1071 WP_002898408.1 porin OmpA -
  ISA74_RS15445 sulA 3235903..3236412 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA74_RS15450 sxy/tfoX 3236761..3237357 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA74_RS15455 yccS 3237371..3239506 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISA74_RS15460 - 3239524..3239970 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ISA74_RS15465 helD 3240095..3242149 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497762 ISA74_RS15450 WP_004179217.1 3236761..3237357(+) (sxy/tfoX) [Klebsiella pneumoniae strain BM337-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497762 ISA74_RS15450 WP_004179217.1 3236761..3237357(+) (sxy/tfoX) [Klebsiella pneumoniae strain BM337-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51