Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KIL00_RS02415 Genome accession   NZ_CP075344
Coordinates   475979..476413 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470979..481413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS02385 (KIL00_02385) ydaD 471628..472488 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  KIL00_RS02390 (KIL00_02390) lyxE 472504..473007 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  KIL00_RS02395 (KIL00_02395) ydaF 473094..473645 (+) 552 WP_014478866.1 GNAT family protein -
  KIL00_RS02400 (KIL00_02400) ydaG 473723..474145 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  KIL00_RS02405 (KIL00_02405) amj 474651..475460 (+) 810 WP_014478868.1 lipid II flippase Amj -
  KIL00_RS02410 (KIL00_02410) ydzA 475504..475794 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  KIL00_RS02415 (KIL00_02415) lrpC 475979..476413 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  KIL00_RS02420 (KIL00_02420) topB 476478..478661 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  KIL00_RS02425 (KIL00_02425) epsJ 478863..479951 (+) 1089 WP_003246551.1 lipoprotein -
  KIL00_RS02430 (KIL00_02430) epsK 479932..480783 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=497732 KIL00_RS02415 WP_003246585.1 475979..476413(+) (lrpC) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=497732 KIL00_RS02415 WP_003246585.1 475979..476413(+) (lrpC) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1