Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA75_RS14145 Genome accession   NZ_CP063917
Coordinates   2971715..2972311 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BM374-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966715..2977311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA75_RS14125 - 2966943..2968700 (-) 1758 WP_194400071.1 Lon protease family protein -
  ISA75_RS14130 matP 2968887..2969339 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA75_RS14135 ompA 2969450..2970502 (-) 1053 WP_008805892.1 porin OmpA -
  ISA75_RS14140 sulA 2970855..2971364 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA75_RS14145 sxy/tfoX 2971715..2972311 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA75_RS14150 yccS 2972325..2974460 (-) 2136 WP_008805895.1 YccS family putative transporter -
  ISA75_RS14155 - 2974478..2974924 (-) 447 WP_012542294.1 YccF domain-containing protein -
  ISA75_RS14160 helD 2975049..2977103 (+) 2055 WP_016160584.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497732 ISA75_RS14145 WP_012542296.1 2971715..2972311(+) (sxy/tfoX) [Klebsiella variicola strain BM374-1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497732 ISA75_RS14145 WP_012542296.1 2971715..2972311(+) (sxy/tfoX) [Klebsiella variicola strain BM374-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505