Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA77_RS09035 Genome accession   NZ_CP063915
Coordinates   1937348..1937944 (+) Length   198 a.a.
NCBI ID   WP_194392023.1    Uniprot ID   -
Organism   Klebsiella variicola strain M186-1-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932348..1942944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA77_RS09015 - 1932577..1934334 (-) 1758 WP_094284866.1 Lon protease family protein -
  ISA77_RS09020 matP 1934520..1934972 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA77_RS09025 ompA 1935083..1936135 (-) 1053 WP_008805892.1 porin OmpA -
  ISA77_RS09030 sulA 1936488..1936997 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA77_RS09035 sxy/tfoX 1937348..1937944 (+) 597 WP_194392023.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA77_RS09040 yccS 1937958..1940093 (-) 2136 WP_008805895.1 YccS family putative transporter -
  ISA77_RS09045 - 1940111..1940557 (-) 447 WP_012542294.1 YccF domain-containing protein -
  ISA77_RS09050 helD 1940682..1942736 (+) 2055 WP_032753960.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22657.16 Da        Isoelectric Point: 9.9635

>NTDB_id=497681 ISA77_RS09035 WP_194392023.1 1937348..1937944(+) (sxy/tfoX) [Klebsiella variicola strain M186-1-2]
MRKLVCPRFPQFQACVSPLGQLYSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497681 ISA77_RS09035 WP_194392023.1 1937348..1937944(+) (sxy/tfoX) [Klebsiella variicola strain M186-1-2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTATATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGTTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505