Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KIH30_RS10370 Genome accession   NZ_CP075343
Coordinates   2299121..2301049 (+) Length   642 a.a.
NCBI ID   WP_268219782.1    Uniprot ID   -
Organism   Streptomyces sp. EMB24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294121..2306049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH30_RS10335 - 2294685..2294855 (+) 171 WP_189365952.1 hypothetical protein -
  KIH30_RS10355 - 2295469..2295774 (+) 306 WP_251097722.1 YtxH domain-containing protein -
  KIH30_RS10360 - 2295813..2297264 (+) 1452 WP_078895094.1 FGGY family carbohydrate kinase -
  KIH30_RS10365 rcrP 2297388..2299121 (+) 1734 WP_199207511.1 ABC transporter ATP-binding protein Regulator
  KIH30_RS10370 rcrQ 2299121..2301049 (+) 1929 WP_268219782.1 ABC transporter ATP-binding protein Regulator
  KIH30_RS10375 - 2301099..2302391 (-) 1293 WP_199207513.1 sigma-70 family RNA polymerase sigma factor -
  KIH30_RS10380 dnaG 2302822..2304741 (-) 1920 WP_268219783.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69648.86 Da        Isoelectric Point: 5.3292

>NTDB_id=497655 KIH30_RS10370 WP_268219782.1 2299121..2301049(+) (rcrQ) [Streptomyces sp. EMB24]
MAGPGGRMTAGVAPGQRSIDFTGSGKRLLGRFGPERLTMYGLLACLVLSVGLSVVGPKILGRATDLVFAGIVGRDMPEGA
TKEQVLESMRERGDDQVADMLRSTDFTPGQGIDFTAVGHVLLLALAVFGAAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGTLNAHVEEMYTGHALVKVFGRQEESARKFAEENEALYEAGFKAQFNSGVMQPLMMCVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDAEEQEADPSPAERPEELRGRVVLE
HVSFRYDPEKPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMTRDELRAGIGMVLQDT
WLFGGTIAENIAYGATREVSREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLVTIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHDKLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=497655 KIH30_RS10370 WP_268219782.1 2299121..2301049(+) (rcrQ) [Streptomyces sp. EMB24]
ATGGCGGGGCCAGGGGGCCGGATGACGGCGGGGGTCGCTCCCGGCCAGCGGTCGATCGACTTCACGGGGTCCGGCAAGCG
GCTGCTCGGCCGCTTCGGACCGGAACGCCTCACCATGTACGGGCTGCTGGCCTGTCTCGTGCTGAGCGTGGGGCTCAGCG
TGGTCGGTCCGAAGATCCTGGGGCGGGCCACCGACCTGGTGTTCGCGGGCATCGTCGGCCGTGACATGCCGGAGGGCGCC
ACCAAGGAGCAGGTGCTGGAGTCGATGCGGGAACGCGGCGACGACCAGGTCGCCGACATGCTGCGCTCCACGGACTTCAC
CCCGGGTCAGGGCATCGACTTCACCGCGGTGGGGCACGTGCTGCTGCTGGCGCTGGCCGTGTTCGGCGCGGCGGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGCACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTGGTCGCCACGCGGGTCGGGAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCACGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGGCGCCAGGAGGAGTCCGCGCGGAAGTTCGCCGAGGAGAACGAGGCTCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTGCGTGTCGAACCTCAACTACGTGCTGGTGGCC
GTCGTCGGCGGTCTGCGGGTGGCGTCCGGGTCGCTGTCCATCGGGGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCCGCCGAGCGGGTCTTCGAGG
TGCTCGACGCGGAGGAGCAGGAGGCCGACCCGTCGCCCGCCGAGCGTCCCGAGGAGCTGCGCGGGCGGGTGGTGCTGGAG
CACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTCGAACCGGGCCGCACGGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGGA
TCACCCTGGACGGCGTGGACATCGCGCGGATGACGCGGGACGAACTGCGTGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGACGCGCGAGGTCAGCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTCCCGGACGGGTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTCAGCGCGGGCGAGAAGCAGCTCGTCACGATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGCACGGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGCCGCACGTCGTT
CGTCATCGCGCACCGCCTGTCGACCATCCGCGACGCGGACACCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGG
GCGCGCACGACAAGCTGCTGGCGGCGGACGGGGCGTACGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.453

96.262

0.389