Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KIH30_RS10365 Genome accession   NZ_CP075343
Coordinates   2297388..2299121 (+) Length   577 a.a.
NCBI ID   WP_199207511.1    Uniprot ID   -
Organism   Streptomyces sp. EMB24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292388..2304121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH30_RS10325 - 2292673..2293710 (+) 1038 WP_048457566.1 rod shape-determining protein -
  KIH30_RS10330 - 2293949..2294620 (+) 672 WP_251097721.1 ANTAR domain-containing protein -
  KIH30_RS10335 - 2294685..2294855 (+) 171 WP_189365952.1 hypothetical protein -
  KIH30_RS10355 - 2295469..2295774 (+) 306 WP_251097722.1 YtxH domain-containing protein -
  KIH30_RS10360 - 2295813..2297264 (+) 1452 WP_078895094.1 FGGY family carbohydrate kinase -
  KIH30_RS10365 rcrP 2297388..2299121 (+) 1734 WP_199207511.1 ABC transporter ATP-binding protein Regulator
  KIH30_RS10370 rcrQ 2299121..2301049 (+) 1929 WP_268219782.1 ABC transporter ATP-binding protein Regulator
  KIH30_RS10375 - 2301099..2302391 (-) 1293 WP_199207513.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62526.52 Da        Isoelectric Point: 6.1293

>NTDB_id=497654 KIH30_RS10365 WP_199207511.1 2297388..2299121(+) (rcrP) [Streptomyces sp. EMB24]
MLIRLLRDRLRPYKRSLALLVVLQFLQTCATLYLPTLNADIIDNGVVQGDTGYILGHGGLMIGISLAQVVCNVGAVYYGA
RTAAALGRDLRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLTLMTFTLMVSAPIMCVGGVVLALGLDVPLSGV
LVAVVPVLGVCVTLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDTYEQRRFHGSNTELTDVSLRAGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PAAPVTELRRHGHLEIRGAGFRYPGAEEPVLRAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLIDATEGEVLVDGVPVA
DVDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQGRDFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=497654 KIH30_RS10365 WP_199207511.1 2297388..2299121(+) (rcrP) [Streptomyces sp. EMB24]
GTGCTCATACGACTTCTACGTGACCGTCTACGGCCCTACAAGAGATCCCTCGCCCTGCTGGTGGTCCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCCAGGGTGACACGGGTTACA
TCCTGGGCCATGGCGGACTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACGTCGGCGCCGTGTACTACGGGGCC
CGGACCGCGGCGGCCCTGGGGCGGGACCTGCGCGCCGCGGTGTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
TCACTTCGGGGCGCCGTCGCTGATCACGCGGACGACGAACGACGTCCAGCAGATCCAGATGCTCACCCTGATGACGTTCA
CCCTCATGGTGTCGGCGCCGATCATGTGCGTGGGCGGTGTGGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCCGTGCTGGGCGTCTGCGTGACACTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGCACCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGGGACA
CCTACGAGCAGCGGCGGTTCCACGGGTCCAACACCGAGCTGACCGACGTGTCGCTGCGCGCCGGCAATCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGTGTCCAGGAGGTGCTGGACACCTCCTCGAGCGTGGTGCCG
CCGGCCGCGCCCGTCACCGAGCTGCGCCGGCACGGACACCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTCGACCTGGTGGCGCGGCCCGGCGAGGTCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTGCCGCGGCTGATCGACGCGACCGAGGGCGAGGTGCTGGTCGACGGGGTGCCGGTGGCG
GACGTCGACCCGGCGCTGCTCGCCCGGACCGTCGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCACAGGGCAGGGACTTCG
TGGAGCGGCTGGAGGGCGGGCTCGACGCACCGATCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGCCAGCGCCTG
GCCATCGCCCGGACGTTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCGCTCGCGCGGGAGACGGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTGCTGGACGAGGGCCGGGTGGTCGGCACCGGCCGGCACCGCGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.432

97.574

0.385