Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KIH30_RS07970 Genome accession   NZ_CP075343
Coordinates   1765179..1768187 (-) Length   1002 a.a.
NCBI ID   WP_268219615.1    Uniprot ID   -
Organism   Streptomyces sp. EMB24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1760179..1773187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH30_RS07945 - 1760820..1760996 (+) 177 WP_216718198.1 hypothetical protein -
  KIH30_RS07950 - 1761251..1762198 (+) 948 WP_268219612.1 hypothetical protein -
  KIH30_RS07955 - 1762383..1762805 (-) 423 WP_268219613.1 Rieske (2Fe-2S) protein -
  KIH30_RS07960 - 1763163..1764197 (+) 1035 WP_086704984.1 LacI family DNA-binding transcriptional regulator -
  KIH30_RS07965 - 1764194..1765114 (+) 921 WP_268219614.1 carbohydrate kinase -
  KIH30_RS07970 uvrA 1765179..1768187 (-) 3009 WP_268219615.1 excinuclease ABC subunit UvrA Machinery gene
  KIH30_RS07975 - 1768412..1769101 (+) 690 WP_268219616.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  KIH30_RS07980 - 1769141..1769797 (+) 657 WP_114873468.1 MBL fold metallo-hydrolase -
  KIH30_RS07985 aroQ 1769816..1770289 (-) 474 WP_189366591.1 type II 3-dehydroquinate dehydratase -
  KIH30_RS07990 - 1770464..1771567 (-) 1104 WP_251097509.1 ionic transporter y4hA -
  KIH30_RS07995 - 1771850..1772854 (-) 1005 WP_114873470.1 TerC family protein -

Sequence

Protein


Download         Length: 1002 a.a.        Molecular weight: 110167.18 Da        Isoelectric Point: 7.8618

>NTDB_id=497650 KIH30_RS07970 WP_268219615.1 1765179..1768187(-) (uvrA) [Streptomyces sp. EMB24]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDRVLDLPEGSRFQVLAPLVRERK
GEFVDLFSDLQTKGYSRARVDGETVQLSSPPTLKKQEKHTIEVVVDRLTVKDGAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDPDKSLDEGAIHPWSHGHIK
DYFDRLVGALADALGFRTDIPWAGLPQRAKKALLHGHKTQVEVRYRNRYGRERRYTTAFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPSCQGTRLKPVVLAVTVMDKSIAEVSAMSISDCADFLGELKLTARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WIVDIGPGAGEHGGKVVHSGSLKELLANAESQTGQYLSGKKAIPLPDLRRPHDPSRRITVRGARENNLQDIDVAFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARTVPGRHTRVEGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHIRRLFA
ETTEAKVRGYMPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIADVLNMPIEEA
MHFFEAVPAISRHLRTLNDVGLGYVRLGQSATTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLLTVLS
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGSGGGLVVAEGTPEQVAGVPASHTGKFLREILGAERISDAQQVRAPRK
AAKKTVAARSTAKKTTTKAVGATAKKTADKTAAKKTTRGTKA

Nucleotide


Download         Length: 3009 bp        

>NTDB_id=497650 KIH30_RS07970 WP_268219615.1 1765179..1768187(-) (uvrA) [Streptomyces sp. EMB24]
GTGGCCGACCGTCTCATCGTCCGTGGAGCGCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTCCCGCGCGACTCGCT
CATCGTCTTCACGGGCCTGTCGGGGTCGGGCAAGTCCTCGCTGGCCTTCGACACCATCTTCGCCGAGGGTCAGCGGCGCT
ACGTCGAGTCGCTCTCCTCCTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGACTC
TCCCCGGCGGTCTCCATCGACCAGAAGTCCACCTCGCGCAACCCGCGCTCCACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGCCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGTCCCGAGTGCGGCCGGCCGATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACAGGGTCCTGGACCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCGCCCCGCTGGTGCGTGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCTCCGACCTCCAGACCAAGGGCTACTCCCGCGCGCGGGTGGACGGCGAGACCGTCCAGCT
GTCCAGCCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTGGACCGCCTCACCGTCAAGGACGGCG
CCAAGCGCCGGCTCACCGACTCCGTGGAGACCGCCCTCGGGCTGTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCGGAGCGCGAGCGCATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTGTCGTTCGAGGAGCT
GGAGCCCCGCTCGTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGAGTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCCGACCCGGACAAGAGCCTCGACGAGGGCGCCATCCACCCGTGGTCACACGGCCACATCAAG
GACTACTTCGACCGCCTCGTGGGCGCCCTCGCGGACGCGCTCGGCTTCCGCACGGACATCCCGTGGGCCGGCCTGCCCCA
GCGCGCCAAGAAGGCTCTGCTCCACGGCCACAAGACCCAGGTCGAGGTCCGCTACCGCAACCGCTACGGGCGCGAGCGGC
GCTACACCACGGCCTTCGAGGGCGCGGTGCCGTTCGTCAAGCGGCGGCACAGCGAGGCCGAGAGCGACGCCAGTCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCTCCTGCCAAGGCACGCGCCTCAAGCCGGTCGTCCTCGCCGTCAC
GGTCATGGACAAGTCCATCGCCGAGGTCTCCGCGATGTCCATCAGCGACTGCGCGGACTTCCTGGGCGAGCTGAAGCTGA
CCGCCCGCGACAAGAAGATCGCCGAGCGGGTCCTCAAGGAGGTCAACGAGCGGCTGCGGTTCCTGGTCGACGTCGGCCTG
GACTACCTCTCGCTGAACCGCGCGGCGGGCACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGCCTGGCCACCCAGATCGG
CTCCGGCCTCGTCGGCGTGCTCTACGTGCTCGACGAGCCGTCCATCGGCCTGCACCAGCGGGACAACCACCGGCTGATCG
AGACCCTGGTCCGACTGCGCGACATGGGCAACACGCTCATCGTCGTGGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGATCGTCGACATCGGCCCCGGCGCCGGCGAGCACGGCGGCAAGGTCGTGCACAGCGGCTCCCTCAAGGAACTGCTCGC
GAACGCCGAGTCGCAGACGGGCCAGTACCTGTCGGGCAAGAAGGCGATCCCGCTGCCCGACCTGCGGCGCCCTCACGACC
CGTCGCGCCGCATCACGGTGCGCGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTGGCCTTCCCGCTGGGCGTCTTC
ACGGCGGTCACCGGCGTGTCCGGCTCCGGCAAGTCCACGCTGGTCAACGACATCCTGTACACACACCTCGCCCGCGAGCT
GAACGGCGCGCGCACCGTGCCCGGCCGGCACACGCGCGTCGAGGGCGACGACCTCGTCGACAAGGTCGTCCACGTCGACC
AGTCGCCCATCGGCCGCACCCCGCGGTCCAACCCGGCGACGTACACGGGCGTCTTCGACCACATCCGCAGGCTGTTCGCG
GAGACCACGGAGGCGAAGGTCCGGGGCTACATGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CTCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTCCCCGACGTCTACGTCCCCTGCGAGGTCTGCCACGGCGCCC
GCTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGACGTGCTGAACATGCCGATCGAAGAGGCC
ATGCACTTCTTCGAGGCGGTCCCGGCGATCTCCCGCCACCTGCGGACGCTCAACGACGTCGGCCTCGGCTACGTCCGGCT
CGGCCAGTCCGCGACCACCCTGTCCGGCGGCGAGGCGCAGCGCGTCAAGCTCGCCAGCGAGCTGCAGAAGCGCTCCACCG
GCCGCACGGTCTACGTCCTCGACGAGCCGACGACCGGTCTGCACTTCGAGGACATCAGCAAGCTGCTGACGGTCCTGTCC
GGCTTGGTGGACAAGGGCAACACGGTGATCGTCATCGAGCACAACCTCGACGTGATCAAGACGGCCGACTGGGTCGTCGA
CATGGGCCCCGAGGGCGGCTCCGGCGGCGGCCTCGTCGTCGCGGAGGGCACGCCCGAACAGGTCGCAGGCGTGCCCGCCA
GCCACACCGGCAAGTTCCTGCGGGAGATCCTGGGCGCGGAGCGGATCAGCGACGCCCAGCAGGTCCGCGCCCCGCGCAAG
GCGGCGAAGAAGACGGTCGCCGCCCGGTCGACGGCGAAGAAGACCACGACCAAGGCGGTCGGAGCCACCGCCAAGAAGAC
GGCCGATAAGACCGCCGCGAAGAAGACGACGCGCGGCACCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

UvrA interaction domain (UvrA_inter)

(131-238)

ABC transporter (ABC_tran)

(628-864)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.143

94.311

0.539
  uvrA Streptococcus pneumoniae TIGR4

57.143

94.311

0.539
  uvrA Streptococcus pneumoniae D39

57.143

94.311

0.539