Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA78_RS01345 Genome accession   NZ_CP063913
Coordinates   261937..262533 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BM336-2-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 256937..267533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA78_RS01330 helD 257145..259199 (-) 2055 WP_004176653.1 DNA helicase IV -
  ISA78_RS01335 - 259324..259770 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ISA78_RS01340 yccS 259788..261923 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISA78_RS01345 sxy/tfoX 261937..262533 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA78_RS01350 sulA 262882..263391 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA78_RS01355 ompA 263744..264814 (+) 1071 WP_002898408.1 porin OmpA -
  ISA78_RS01360 matP 264946..265398 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA78_RS01365 - 265584..267341 (+) 1758 WP_020804925.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497648 ISA78_RS01345 WP_004179217.1 261937..262533(-) (sxy/tfoX) [Klebsiella pneumoniae strain BM336-2-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497648 ISA78_RS01345 WP_004179217.1 261937..262533(-) (sxy/tfoX) [Klebsiella pneumoniae strain BM336-2-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51