Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA79_RS05315 Genome accession   NZ_CP063912
Coordinates   1070242..1070838 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BS359-2-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065242..1075838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA79_RS05300 helD 1065450..1067504 (-) 2055 WP_043875556.1 DNA helicase IV -
  ISA79_RS05305 - 1067629..1068075 (+) 447 WP_012542294.1 YccF domain-containing protein -
  ISA79_RS05310 yccS 1068093..1070228 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ISA79_RS05315 sxy/tfoX 1070242..1070838 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA79_RS05320 sulA 1071189..1071698 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA79_RS05325 ompA 1072051..1073103 (+) 1053 WP_008805892.1 porin OmpA -
  ISA79_RS05330 matP 1073214..1073666 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA79_RS05335 - 1073852..1075609 (+) 1758 WP_043875557.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497625 ISA79_RS05315 WP_012542296.1 1070242..1070838(-) (sxy/tfoX) [Klebsiella variicola strain BS359-2-1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497625 ISA79_RS05315 WP_012542296.1 1070242..1070838(-) (sxy/tfoX) [Klebsiella variicola strain BS359-2-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505