Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   SSUD9_RS10640 Genome accession   NC_017620
Coordinates   2176690..2177454 (+) Length   254 a.a.
NCBI ID   WP_004194534.1    Uniprot ID   A0A126UJW8
Organism   Streptococcus suis D9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2171690..2182454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS10625 (SSUD9_2199) - 2174072..2174755 (-) 684 WP_004194526.1 YoaK family protein -
  SSUD9_RS10630 (SSUD9_2200) rlmH 2174780..2175259 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SSUD9_RS10635 (SSUD9_2201) htrA 2175433..2176629 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  SSUD9_RS10640 (SSUD9_2202) spo0J 2176690..2177454 (+) 765 WP_004194534.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 254 a.a.        Molecular weight: 28993.28 Da        Isoelectric Point: 9.4760

>NTDB_id=49757 SSUD9_RS10640 WP_004194534.1 2176690..2177454(+) (spo0J) [Streptococcus suis D9]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRINF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=49757 SSUD9_RS10640 WP_004194534.1 2176690..2177454(+) (spo0J) [Streptococcus suis D9]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAACTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A126UJW8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.762

99.213

0.543


Multiple sequence alignment