Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA82_RS03140 Genome accession   NZ_CP063908
Coordinates   682981..683577 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M212-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 677981..688577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA82_RS03115 - 678173..679930 (-) 1758 WP_014907886.1 Lon protease family protein -
  ISA82_RS03120 matP 680116..680568 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA82_RS03125 ompA 680700..681770 (-) 1071 WP_002898408.1 porin OmpA -
  ISA82_RS03130 sulA 682123..682632 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ISA82_RS03135 - 682675..682890 (-) 216 WP_009485781.1 hypothetical protein -
  ISA82_RS03140 sxy/tfoX 682981..683577 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA82_RS03145 yccS 683591..685726 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISA82_RS03150 - 685744..686190 (-) 447 WP_014907884.1 YccF domain-containing protein -
  ISA82_RS03155 helD 686315..688369 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497556 ISA82_RS03140 WP_004179217.1 682981..683577(+) (sxy/tfoX) [Klebsiella pneumoniae strain M212-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497556 ISA82_RS03140 WP_004179217.1 682981..683577(+) (sxy/tfoX) [Klebsiella pneumoniae strain M212-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51