Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA83_RS22550 Genome accession   NZ_CP063906
Coordinates   4669549..4670145 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BM327-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4664549..4675145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA83_RS22530 - 4664741..4666498 (-) 1758 WP_004147851.1 Lon protease family protein -
  ISA83_RS22535 matP 4666684..4667136 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA83_RS22540 ompA 4667268..4668338 (-) 1071 WP_002898408.1 porin OmpA -
  ISA83_RS22545 sulA 4668691..4669200 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISA83_RS22550 sxy/tfoX 4669549..4670145 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA83_RS22555 yccS 4670159..4672294 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISA83_RS22560 - 4672312..4672758 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ISA83_RS22565 helD 4672883..4674937 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497555 ISA83_RS22550 WP_004179217.1 4669549..4670145(+) (sxy/tfoX) [Klebsiella pneumoniae strain BM327-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497555 ISA83_RS22550 WP_004179217.1 4669549..4670145(+) (sxy/tfoX) [Klebsiella pneumoniae strain BM327-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51