Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA86_RS24040 Genome accession   NZ_CP063900
Coordinates   4988851..4989447 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain BS324-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4983851..4994447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA86_RS24015 - 4983985..4985742 (-) 1758 WP_017899459.1 Lon protease family protein -
  ISA86_RS24020 matP 4985928..4986380 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA86_RS24025 ompA 4986570..4987640 (-) 1071 WP_004201430.1 porin OmpA -
  ISA86_RS24030 sulA 4987993..4988502 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  ISA86_RS24035 - 4988528..4988833 (+) 306 WP_153650437.1 hypothetical protein -
  ISA86_RS24040 sxy/tfoX 4988851..4989447 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA86_RS24045 yccS 4989458..4991593 (-) 2136 WP_049093010.1 YccS family putative transporter -
  ISA86_RS24050 - 4991611..4992057 (-) 447 WP_004201437.1 YccF domain-containing protein -
  ISA86_RS24055 helD 4992182..4994236 (+) 2055 WP_004201438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=497483 ISA86_RS24040 WP_004201433.1 4988851..4989447(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS324-2]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497483 ISA86_RS24040 WP_004201433.1 4988851..4989447(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS324-2]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCGCTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5