Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA87_RS10190 Genome accession   NZ_CP063898
Coordinates   2189540..2190136 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BS326-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2184540..2195136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA87_RS10170 - 2184769..2186526 (-) 1758 WP_012542299.1 Lon protease family protein -
  ISA87_RS10175 matP 2186712..2187164 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISA87_RS10180 ompA 2187275..2188327 (-) 1053 WP_008805892.1 porin OmpA -
  ISA87_RS10185 sulA 2188680..2189189 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISA87_RS10190 sxy/tfoX 2189540..2190136 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA87_RS10195 yccS 2190150..2192285 (-) 2136 WP_008805895.1 YccS family putative transporter -
  ISA87_RS10200 - 2192303..2192749 (-) 447 WP_008805896.1 YccF domain-containing protein -
  ISA87_RS10205 helD 2192874..2194928 (+) 2055 WP_048267716.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497447 ISA87_RS10190 WP_012542296.1 2189540..2190136(+) (sxy/tfoX) [Klebsiella variicola strain BS326-1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497447 ISA87_RS10190 WP_012542296.1 2189540..2190136(+) (sxy/tfoX) [Klebsiella variicola strain BS326-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505