Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISA88_RS02390 Genome accession   NZ_CP063896
Coordinates   465100..465696 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain BS419-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 460100..470696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISA88_RS02375 helD 460311..462365 (-) 2055 WP_065697194.1 DNA helicase IV -
  ISA88_RS02380 - 462490..462936 (+) 447 WP_065697193.1 YccF domain-containing protein -
  ISA88_RS02385 yccS 462954..465089 (+) 2136 WP_064150370.1 YccS family putative transporter -
  ISA88_RS02390 sxy/tfoX 465100..465696 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  ISA88_RS02395 - 465714..466019 (-) 306 WP_153650437.1 hypothetical protein -
  ISA88_RS02400 sulA 466045..466554 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  ISA88_RS02405 ompA 466907..467977 (+) 1071 WP_004201430.1 porin OmpA -
  ISA88_RS02410 matP 468160..468612 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISA88_RS02415 - 468798..470555 (+) 1758 WP_194418113.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=497413 ISA88_RS02390 WP_004201433.1 465100..465696(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS419-1]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497413 ISA88_RS02390 WP_004201433.1 465100..465696(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain BS419-1]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5