Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISB10_RS21670 Genome accession   NZ_CP063890
Coordinates   4537320..4537916 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BS433-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4532320..4542916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISB10_RS21645 - 4532512..4534269 (-) 1758 WP_014907886.1 AAA family ATPase -
  ISB10_RS21650 matP 4534455..4534907 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISB10_RS21655 ompA 4535039..4536109 (-) 1071 WP_002898408.1 porin OmpA -
  ISB10_RS21660 sulA 4536462..4536971 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ISB10_RS21665 - 4537014..4537229 (-) 216 WP_009485781.1 hypothetical protein -
  ISB10_RS21670 sxy/tfoX 4537320..4537916 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISB10_RS21675 yccS 4537930..4540065 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISB10_RS21680 - 4540083..4540529 (-) 447 WP_014907884.1 YccF domain-containing protein -
  ISB10_RS21685 helD 4540654..4542708 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497412 ISB10_RS21670 WP_004179217.1 4537320..4537916(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS433-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497412 ISB10_RS21670 WP_004179217.1 4537320..4537916(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS433-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51