Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   KIP81_RS04825 Genome accession   NZ_CP075172
Coordinates   955944..957014 (+) Length   356 a.a.
NCBI ID   WP_074565945.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950944..962014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS04805 (KIP81_04805) - 950949..952682 (+) 1734 WP_243603339.1 ABC transporter ATP-binding protein -
  KIP81_RS04810 (KIP81_04810) - 952692..953279 (+) 588 WP_243603340.1 MptD family putative ECF transporter S component -
  KIP81_RS04815 (KIP81_04815) - 953379..954038 (+) 660 WP_243603341.1 energy-coupling factor transporter transmembrane component T -
  KIP81_RS04820 (KIP81_04820) - 954042..955424 (+) 1383 WP_243603342.1 ABC transporter ATP-binding protein -
  KIP81_RS04825 (KIP81_04825) xerS 955944..957014 (+) 1071 WP_074565945.1 tyrosine recombinase XerS Machinery gene
  KIP81_RS04830 (KIP81_04830) - 957198..958142 (-) 945 WP_243603343.1 sensor histidine kinase -
  KIP81_RS04835 (KIP81_04835) braR 958139..958801 (-) 663 WP_024344090.1 response regulator transcription factor Regulator
  KIP81_RS04840 (KIP81_04840) - 958902..960887 (-) 1986 WP_243603344.1 FtsX-like permease family protein -
  KIP81_RS04845 (KIP81_04845) - 960889..961641 (-) 753 WP_033152622.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41329.65 Da        Isoelectric Point: 9.8686

>NTDB_id=497407 KIP81_RS04825 WP_074565945.1 955944..957014(+) (xerS) [Streptococcus equinus strain SheepZ001]
MKREKLLEKIDELKKIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNAKKIADVELTTLEHLSKKDME
SFVLYLRERPSLNTYSTKKGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=497407 KIP81_RS04825 WP_074565945.1 955944..957014(+) (xerS) [Streptococcus equinus strain SheepZ001]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAATTAAAAAAAATAATGCCCTGGTATGTCCTTGACTATTACCAATC
AAAACTTTCTGTGCCATATAGTTTTACAACCTTGTACGAATATCTTAAGGAATACAGACGATTTTTTGAATGGATTCTTG
AATCAGGAATTTCAAATGCTAAAAAAATTGCTGACGTTGAGTTAACAACTTTAGAGCATTTGTCTAAAAAAGATATGGAA
TCCTTCGTTCTCTATTTGCGTGAACGACCTTCGCTAAATACCTATTCAACTAAGAAAGGGGTTTCTCAGACCACTATCAA
TCGCACGTTATCAGCGCTTTCAAGCCTTTTTAAATATTTAACAGAAGAGGTTGAAGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATTGCAACTAAGAAGAAGAAAGAAACTTTAGCTGCTCGTGCTGAAAACATCAAAGGAAAG
CTATTCTTGGGAGATGAGACGATGGCGTTTATCGAGTATATTGACAAAGAATATCAGAATAAGCTCTCTCACCGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGAGATTTAGCTATTATTGCACTTCTTCTTGCTTCTGGTGTCCGTCTTTCTGAAG
CAGTTAATCTTGATTTAAAAGATTTAAACCTCAATATGATGGTTATTGAAGTCACTCGTAAAGGTGGAAAACGAGACTCT
GTTAATGTTGCTGCTTTTGCTAAACCATATCTCGAAGAATACTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATTGATGCATCAAGTATTGAAAAATTAGTAGCTA
AATACTCACAAGACTTTAAAGTTCGAGTGACACCCCACAAGCTACGTCACACTTTGGCAACAAGATTGTATGGGGCTACT
AAATCACAAGTACTCGTCAGCCATCAATTGGGACATGCAAGTACTCAAGTTACCGACTTATATACCCATATTGTCAATGA
TGAGCAGAAAAACGCTTTGGACAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834