Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   KIP81_RS03720 Genome accession   NZ_CP075172
Coordinates   724433..728059 (+) Length   1208 a.a.
NCBI ID   WP_243603217.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719433..733059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS03710 (KIP81_03715) - 719755..721059 (+) 1305 WP_243603215.1 McrC family protein -
  KIP81_RS03715 (KIP81_03720) rexB 721198..724443 (+) 3246 WP_243603216.1 ATP-dependent nuclease subunit B Machinery gene
  KIP81_RS03720 (KIP81_03725) rexA 724433..728059 (+) 3627 WP_243603217.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KIP81_RS03725 (KIP81_03730) - 728138..729283 (-) 1146 WP_243603218.1 cobalamin-independent methionine synthase II family protein -
  KIP81_RS03730 (KIP81_03735) - 729469..729909 (+) 441 WP_021142019.1 cytidine deaminase -
  KIP81_RS03735 (KIP81_03740) - 729938..730672 (+) 735 WP_074629677.1 PHP domain-containing protein -
  KIP81_RS03740 (KIP81_03745) - 730686..731309 (+) 624 WP_243603219.1 alpha/beta hydrolase -
  KIP81_RS03745 (KIP81_03750) - 731386..731562 (-) 177 WP_006532352.1 DUF3042 family protein -
  KIP81_RS03750 (KIP81_03755) miaA 731749..732648 (+) 900 WP_243603220.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 1208 a.a.        Molecular weight: 138669.37 Da        Isoelectric Point: 4.8172

>NTDB_id=497399 KIP81_RS03720 WP_243603217.1 724433..728059(+) (rexA) [Streptococcus equinus strain SheepZ001]
MNFKPFLTSEEISFLQAQEAKSSSKQKRTPEQIEAIYSSGNNILVSASAGSGKTFVMVERIIDKILRGVTVDQLFISTFT
VKAAGELKERLEKKISQVLQVTKDNDTKTYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDLVK
NEVFADLFSDYMLGENQDIFRKLVRNFSGNRKDSSAFREIVYKIYDFSQATDNPKKWMSEVFLKGAKTYTDFSAIPDQEV
NDFLSCLHDTANHLQDVTDLEDYKQVTAKGTPTANYKKHLNMIEHLHEWAMHFETLYGREGLGRLASDVADLIPSSPAVT
VAGTKYLVFKNLQGRLTGLKHLETIFNYQSESLPLLELLQNFVQDFSEQYLQAKIQENSFEFSDIAHFAIEILEENPDIR
KLYQDKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQENPEHGKLILLKENFR
SQSEVLDATNSIFTHLMDESVGEILYDGMHQLVAGSDAQKEAHPENETKVLIYDTDEANGAPEGAEEESINPNEVKLVAK
EIIRLHNEEHVPFEDITLLVSLRTRNNAILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFAFNEDDLARLALQTLEDEHKANLYQKLEHALSGTGEHAELMTAALQNKLKDFMDCLASWREFAKWHSLYDLIWKIYN
ERFYYDYVGNLPRAEQRQANLYALALRANNFERGGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLE
FKYVFILNLDKRFSIQDMTSPLILSRQNGAGIKYLADMREELETDYFPAVKVSMDTMPYQLNKRELRLAMLSEQMRLLYV
AMTRAEKRLYLVGKASAEKLVDKYSGKSENNHIPVSERETFMTFQDWILAIYDTYKNLPFKVEFVTDDDLTEEKIGQIEM
TSAIKPDDLKDNRQTENIAEALDRLEAVEKLNTEFKAAINLPSLRTPSQVKKLYEPVMDVDGVDVMAKPYQAKPTFELPD
FSKKAKVEATAIGSAMHELMQRITLSEQVTLDDITSALAQVSAEDDVKSRIRLEHVLDFFEGSELGQMIQKNVDKIYREA
PFAMLKEDPESNEKFVVRGIVDGYLLFDDRIVLFDYKTDKYTNSEDIKKRYQGQMALYAEALSKSYHIEQVDKYLVLLGG
ENLEVVKL

Nucleotide


Download         Length: 3627 bp        

>NTDB_id=497399 KIP81_RS03720 WP_243603217.1 724433..728059(+) (rexA) [Streptococcus equinus strain SheepZ001]
ATGAACTTTAAGCCGTTTTTGACATCAGAAGAGATTTCCTTTTTGCAAGCTCAAGAAGCAAAGTCATCAAGCAAACAAAA
ACGCACGCCTGAACAGATTGAAGCGATTTATAGTTCTGGCAATAACATTTTAGTCTCAGCCTCAGCGGGTTCTGGTAAAA
CCTTTGTCATGGTTGAGCGCATTATTGATAAGATTTTACGTGGTGTCACTGTTGACCAGCTTTTCATCTCAACTTTTACT
GTTAAAGCAGCAGGTGAGTTAAAAGAGCGTCTTGAGAAAAAAATTAGTCAGGTTTTACAAGTAACCAAAGACAATGACAC
AAAAACATATTTGAATGAGCAATTGCTAGGTCTTCAGACAGCTGACATTGGTACAATGGATGCCTTCACGCAAAAATTGG
TTAACCAATATGGCTACACGCTTGGTATTTCGCCAACTTTCCGTATTATGACTGATAAGAGCGAGCAAGATCTTGTCAAA
AATGAAGTATTTGCAGATTTATTTTCTGATTATATGCTTGGTGAGAACCAAGACATTTTCCGTAAATTGGTGCGTAATTT
TTCAGGAAATCGCAAGGATAGCTCAGCGTTTAGAGAAATCGTTTATAAGATTTATGACTTCAGTCAAGCTACGGATAATC
CAAAAAAATGGATGTCTGAGGTATTTTTAAAAGGTGCTAAAACTTATACGGATTTTTCTGCTATTCCAGACCAAGAAGTC
AATGACTTTCTAAGTTGCTTACATGATACGGCAAATCATTTGCAGGATGTGACAGACTTAGAGGATTATAAGCAGGTTAC
AGCTAAGGGGACACCTACTGCCAATTATAAAAAACACTTGAATATGATTGAGCATTTGCATGAATGGGCAATGCATTTTG
AGACGCTTTACGGGCGTGAAGGTTTGGGACGTCTGGCTTCTGATGTGGCGGATTTAATTCCATCTAGTCCAGCTGTGACA
GTTGCAGGAACGAAATATCTTGTCTTTAAAAATCTACAAGGGCGCTTGACCGGGCTCAAACACCTAGAGACGATTTTTAA
TTATCAGTCAGAAAGTCTTCCTTTGTTGGAATTATTGCAGAATTTTGTGCAAGATTTTTCTGAGCAATATTTACAAGCCA
AAATCCAAGAAAACTCTTTTGAATTCTCAGATATTGCACACTTTGCGATTGAGATTTTAGAGGAAAATCCAGATATTCGT
AAGCTTTATCAAGATAAGTACCATGAAGTGATGGTCGATGAATACCAAGATAACAACCACACGCAGGAGCGCATGTTGGA
ATTGCTATCAAACGGTCATAATCGTTTTATGGTGGGAGATATCAAGCAATCGATTTATCGTTTCCGTCAGGCTGACCCAC
AGATTTTCAATCAAAAATTCAAAGATTTTCAAGAAAATCCTGAGCATGGAAAATTAATTTTGCTCAAAGAAAATTTCCGT
AGCCAATCAGAAGTTCTAGATGCAACAAATAGCATTTTTACACACTTGATGGACGAGTCTGTTGGTGAGATTTTGTATGA
TGGCATGCATCAACTTGTTGCAGGAAGTGATGCTCAGAAAGAAGCTCACCCCGAAAATGAAACAAAAGTGCTCATTTACG
ACACTGATGAGGCAAATGGTGCTCCAGAAGGTGCTGAAGAAGAGTCAATCAATCCAAACGAAGTTAAGTTAGTCGCAAAA
GAAATCATTCGTTTGCATAATGAAGAACATGTTCCTTTTGAAGATATTACACTTTTAGTTTCGCTTCGTACGCGAAATAA
TGCGATTTTGCAAACCTTTGAACATTACGGGATTCCTTTGGTAACGGATGGTGGTGAACAAAATTATCTTAAATCGGTTG
AGGTTATGGTGATGCTTGATACGCTTAGAGCACTTGATAATCCGCTTAATGATTATGCCCTAGTTGCTCTGATGCGCTCA
CCAATGTTTGCCTTTAATGAAGATGACCTTGCTAGACTAGCACTTCAGACTCTTGAAGATGAACACAAGGCTAATCTTTA
TCAAAAACTCGAACACGCTTTGAGTGGCACAGGTGAACATGCTGAATTGATGACGGCAGCTCTTCAGAATAAATTGAAAG
ATTTCATGGACTGTCTTGCAAGCTGGCGTGAATTTGCCAAATGGCACTCGCTTTATGACTTGATTTGGAAGATTTATAAT
GAGCGTTTCTATTATGATTACGTTGGAAATCTGCCTCGTGCAGAGCAACGTCAAGCCAATCTTTATGCGCTTGCCCTTCG
TGCCAATAATTTTGAACGAGGTGGTTTTAAAGGCTTATCACGCTTTATTCGTATGATTGACAAAGTTCTTGAGAGTGAAA
ATGATTTGGCAGATGTTGAAGTGGCACTGCCTAAAAATGCTGTAAACTTGATGACCATTCACAAGAGTAAGGGACTTGAG
TTTAAGTATGTTTTCATTTTAAATCTTGATAAGAGATTTAGTATTCAAGACATGACTTCGCCTTTGATTCTGTCACGCCA
AAATGGAGCAGGTATCAAGTATTTAGCTGATATGCGAGAAGAGTTGGAAACTGATTATTTCCCAGCAGTAAAAGTCAGCA
TGGATACTATGCCTTATCAACTGAATAAACGAGAACTACGTTTAGCCATGCTATCTGAACAAATGCGTCTGCTTTACGTT
GCAATGACTCGTGCAGAAAAGAGATTGTATTTAGTCGGAAAAGCAAGTGCAGAAAAATTAGTGGACAAATACAGTGGAAA
ATCAGAAAATAATCATATTCCAGTATCTGAGCGTGAAACCTTCATGACATTTCAAGACTGGATTCTTGCTATTTATGATA
CTTACAAAAATTTGCCATTTAAAGTTGAATTTGTCACAGATGATGATTTGACAGAGGAAAAAATTGGTCAAATTGAAATG
ACGTCTGCTATTAAACCAGATGACTTGAAAGATAATCGTCAGACAGAAAATATTGCAGAAGCCTTGGATAGGTTAGAGGC
TGTAGAAAAGCTAAATACTGAATTTAAAGCTGCGATTAATTTGCCAAGTTTGAGAACACCAAGTCAAGTTAAAAAACTTT
ATGAGCCAGTTATGGACGTTGATGGTGTTGATGTCATGGCAAAACCATATCAAGCTAAGCCAACGTTTGAGCTTCCAGAT
TTTTCAAAGAAAGCAAAAGTAGAAGCGACAGCAATTGGTTCTGCGATGCACGAACTCATGCAGAGAATTACACTATCAGA
GCAAGTGACACTAGATGATATCACATCAGCATTAGCGCAAGTTTCAGCTGAAGATGATGTCAAATCACGTATTCGTCTTG
AGCATGTGCTTGATTTCTTTGAAGGTTCAGAACTCGGACAAATGATTCAGAAAAATGTTGATAAAATTTATCGTGAAGCT
CCATTTGCCATGTTAAAAGAAGACCCAGAAAGTAACGAAAAATTTGTCGTACGTGGGATTGTCGATGGTTATCTTTTGTT
CGACGACCGAATTGTTCTGTTTGATTATAAAACAGACAAATACACTAACAGCGAAGATATCAAAAAACGCTATCAGGGAC
AAATGGCTCTTTACGCCGAAGCCCTTAGCAAGTCTTACCATATCGAACAAGTTGATAAATACCTTGTTTTACTTGGCGGA
GAAAACTTAGAAGTAGTTAAACTGTAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-892)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1040-1186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

53.143

100

0.539