Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISB13_RS03465 Genome accession   NZ_CP063889
Coordinates   673456..674052 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BS325-3-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 668456..679052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISB13_RS03450 helD 668664..670718 (-) 2055 WP_043875556.1 DNA helicase IV -
  ISB13_RS03455 - 670843..671289 (+) 447 WP_012542294.1 YccF domain-containing protein -
  ISB13_RS03460 yccS 671307..673442 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ISB13_RS03465 sxy/tfoX 673456..674052 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISB13_RS03470 sulA 674403..674912 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISB13_RS03475 ompA 675265..676317 (+) 1053 WP_008805892.1 porin OmpA -
  ISB13_RS03480 matP 676428..676880 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISB13_RS03485 - 677066..678823 (+) 1758 WP_043875557.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497367 ISB13_RS03465 WP_012542296.1 673456..674052(-) (sxy/tfoX) [Klebsiella variicola strain BS325-3-1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497367 ISB13_RS03465 WP_012542296.1 673456..674052(-) (sxy/tfoX) [Klebsiella variicola strain BS325-3-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505