Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KIP81_RS00275 Genome accession   NZ_CP075172
Coordinates   34009..34764 (+) Length   251 a.a.
NCBI ID   WP_003067284.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29009..39764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS00255 (KIP81_00255) mreD 29594..30100 (+) 507 WP_029876012.1 rod shape-determining protein MreD -
  KIP81_RS00260 (KIP81_00260) - 30202..31554 (+) 1353 WP_243602924.1 CHAP domain-containing protein -
  KIP81_RS00265 (KIP81_00265) - 31686..32657 (+) 972 WP_003067288.1 ribose-phosphate diphosphokinase -
  KIP81_RS00270 (KIP81_00270) - 32844..34019 (+) 1176 WP_021141384.1 pyridoxal phosphate-dependent aminotransferase -
  KIP81_RS00275 (KIP81_00275) recO 34009..34764 (+) 756 WP_003067284.1 DNA repair protein RecO Machinery gene
  KIP81_RS00280 (KIP81_00280) plsX 34900..35895 (+) 996 WP_027968255.1 phosphate acyltransferase PlsX -
  KIP81_RS00285 (KIP81_00285) - 35913..36155 (+) 243 WP_003067281.1 acyl carrier protein -
  KIP81_RS00290 (KIP81_00290) purC 36280..36990 (+) 711 WP_039696061.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29212.55 Da        Isoelectric Point: 6.4978

>NTDB_id=497352 KIP81_RS00275 WP_003067284.1 34009..34764(+) (recO) [Streptococcus equinus strain SheepZ001]
MQTKETYGLVLYNRNYREDDKLVKIFTETDGKHMFFVRHAGKSRFNSVIQPLTIAKFIVKINDNGLSFIEDYKEVASFKE
INADLFKLSYASYVTSLADAAVPDNVADSQLFAFLNKTLSLMEEGLDYEILTNIFEIQILERFGISLNLHECAFCHRVGL
PFDFSHKYTGLLCPEHYAKDEHRSHVDPNMLYLLDRFQAIQFDELKTISVKPDMKRKLRLFIDDIYDNYVGVRLKSKKFI
DDLGSWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=497352 KIP81_RS00275 WP_003067284.1 34009..34764(+) (recO) [Streptococcus equinus strain SheepZ001]
ATGCAAACTAAAGAAACTTATGGTCTTGTCCTCTATAATCGCAATTATCGCGAGGATGACAAACTAGTTAAGATTTTTAC
AGAAACAGATGGCAAGCATATGTTTTTTGTAAGACATGCGGGAAAATCTCGTTTTAATTCTGTGATTCAGCCGTTGACCA
TTGCTAAATTTATCGTAAAGATTAACGACAATGGTTTGTCGTTCATCGAGGATTATAAGGAAGTGGCTTCGTTTAAGGAA
ATCAATGCTGATTTATTTAAGTTGTCATATGCTTCTTATGTAACTTCTTTGGCTGATGCTGCTGTGCCTGATAATGTGGC
TGATTCGCAGTTGTTTGCTTTTTTGAACAAGACTTTATCTTTGATGGAAGAGGGTCTTGATTATGAAATCTTGACGAATA
TCTTTGAGATTCAGATTTTGGAGCGCTTTGGTATTAGTCTGAATCTGCATGAATGTGCATTTTGTCATCGTGTAGGACTT
CCTTTTGATTTTTCTCATAAGTATACTGGCTTGCTTTGCCCAGAGCATTATGCAAAAGATGAGCATCGAAGTCATGTTGA
TCCAAATATGCTTTATCTCCTTGATCGTTTTCAAGCCATTCAATTTGATGAGTTAAAGACAATTTCGGTTAAACCTGACA
TGAAACGAAAACTGCGTTTATTTATCGATGATATCTATGATAACTATGTCGGTGTTCGATTGAAGAGTAAGAAGTTCATC
GATGATTTAGGTTCTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.745

100

0.637