Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISB15_RS18140 Genome accession   NZ_CP063885
Coordinates   3791527..3792123 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BS361-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3786527..3797123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISB15_RS18120 - 3786719..3788476 (-) 1758 WP_004147851.1 Lon protease family protein -
  ISB15_RS18125 matP 3788662..3789114 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISB15_RS18130 ompA 3789246..3790316 (-) 1071 WP_002898408.1 porin OmpA -
  ISB15_RS18135 sulA 3790669..3791178 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ISB15_RS18140 sxy/tfoX 3791527..3792123 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISB15_RS18145 yccS 3792137..3794272 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ISB15_RS18150 - 3794290..3794736 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ISB15_RS18155 helD 3794861..3796915 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497341 ISB15_RS18140 WP_004179217.1 3791527..3792123(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS361-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497341 ISB15_RS18140 WP_004179217.1 3791527..3792123(+) (sxy/tfoX) [Klebsiella pneumoniae strain BS361-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51