Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD49_RS02640 Genome accession   NZ_CP063881
Coordinates   502742..503338 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain S90-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 497742..508338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD49_RS02625 helD 497950..500004 (-) 2055 WP_014907883.1 DNA helicase IV -
  IOD49_RS02630 - 500129..500575 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IOD49_RS02635 yccS 500593..502728 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IOD49_RS02640 sxy/tfoX 502742..503338 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD49_RS02645 sulA 503686..504195 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD49_RS02650 ompA 504548..505618 (+) 1071 WP_002898408.1 porin OmpA -
  IOD49_RS02655 matP 505750..506202 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD49_RS02660 - 506388..508145 (+) 1758 WP_048265355.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497295 IOD49_RS02640 WP_004179217.1 502742..503338(-) (sxy/tfoX) [Klebsiella pneumoniae strain S90-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497295 IOD49_RS02640 WP_004179217.1 502742..503338(-) (sxy/tfoX) [Klebsiella pneumoniae strain S90-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51