Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISB47_RS24400 Genome accession   NZ_CP063878
Coordinates   4911319..4911915 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M169-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4906319..4916915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISB47_RS24385 helD 4906527..4908581 (-) 2055 WP_009308304.1 DNA helicase IV -
  ISB47_RS24390 - 4908706..4909152 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ISB47_RS24395 yccS 4909170..4911305 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ISB47_RS24400 sxy/tfoX 4911319..4911915 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ISB47_RS24405 sulA 4912264..4912773 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ISB47_RS24410 ompA 4913126..4914196 (+) 1071 WP_002898408.1 porin OmpA -
  ISB47_RS24415 matP 4914329..4914781 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ISB47_RS24420 - 4914967..4916724 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497294 ISB47_RS24400 WP_004179217.1 4911319..4911915(-) (sxy/tfoX) [Klebsiella pneumoniae strain M169-3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497294 ISB47_RS24400 WP_004179217.1 4911319..4911915(-) (sxy/tfoX) [Klebsiella pneumoniae strain M169-3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51