Detailed information NTG0497293

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4F96_RS05520
• Genome accession: NZ_CP075062
• Coordinates: 1139550..1140542 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC_J_9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1134550..1145542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4F96_RS05490 (H4F96_05490)	ispD	1134611..1135321 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4F96_RS05495 (H4F96_05495)	ispF	1135321..1135800 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4F96_RS05500 (H4F96_05500)	truD	1135797..1136846 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H4F96_RS05505 (H4F96_05505)	surE	1136827..1137588 (+)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
H4F96_RS05510 (H4F96_05510)	pcm	1137582..1138208 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4F96_RS05515 (H4F96_05515)	nlpD	1138393..1139487 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H4F96_RS05520 (H4F96_05520)	rpoS	1139550..1140542 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H4F96_RS05525 (H4F96_05525)	-	1140663..1141070 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
H4F96_RS05530 (H4F96_05530)	-	1141217..1141810 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H4F96_RS05535 (H4F96_05535)	-	1141810..1143237 (+)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H4F96_RS05540 (H4F96_05540)	-	1143248..1143484 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H4F96_RS05545 (H4F96_05545)	ygbN	1143523..1144887 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=497293 H4F96_RS05520 WP_000081550.1 1139550..1140542(+) (rpoS) [Escherichia coli strain EC_J_9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=497293 H4F96_RS05520 WP_000081550.1 1139550..1140542(+) (rpoS) [Escherichia coli strain EC_J_9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715