Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD26_RS04350 Genome accession   NZ_CP063874
Coordinates   830273..830869 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain S174-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 825273..835869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD26_RS04335 helD 825484..827538 (-) 2055 WP_087771555.1 DNA helicase IV -
  IOD26_RS04340 - 827663..828109 (+) 447 WP_004201437.1 YccF domain-containing protein -
  IOD26_RS04345 yccS 828127..830262 (+) 2136 WP_004201435.1 YccS family putative transporter -
  IOD26_RS04350 sxy/tfoX 830273..830869 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD26_RS04355 - 830887..831192 (-) 306 WP_200983651.1 hypothetical protein -
  IOD26_RS04360 sulA 831218..831727 (+) 510 WP_053810586.1 SOS-induced cell division inhibitor SulA -
  IOD26_RS04365 ompA 832080..833150 (+) 1071 WP_002898408.1 porin OmpA -
  IOD26_RS04370 matP 833361..833813 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD26_RS04375 - 833999..835756 (+) 1758 WP_180241759.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=497248 IOD26_RS04350 WP_004201433.1 830273..830869(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain S174-1]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497248 IOD26_RS04350 WP_004201433.1 830273..830869(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain S174-1]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5