Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IRJ19_RS02255 Genome accession   NZ_CP063871
Coordinates   428365..428961 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain S141     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 423365..433961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ19_RS02240 helD 423573..425627 (-) 2055 WP_040147912.1 DNA helicase IV -
  IRJ19_RS02245 - 425752..426198 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IRJ19_RS02250 yccS 426216..428351 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IRJ19_RS02255 sxy/tfoX 428365..428961 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  IRJ19_RS02260 sulA 429310..429819 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IRJ19_RS02265 ompA 430172..431242 (+) 1071 WP_002898408.1 porin OmpA -
  IRJ19_RS02270 matP 431374..431826 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IRJ19_RS02275 - 432012..433769 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=497224 IRJ19_RS02255 WP_004150836.1 428365..428961(-) (sxy/tfoX) [Klebsiella pneumoniae strain S141]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497224 IRJ19_RS02255 WP_004150836.1 428365..428961(-) (sxy/tfoX) [Klebsiella pneumoniae strain S141]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51