Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISD32_RS09700 Genome accession   NZ_CP063867
Coordinates   1976428..1977024 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain M142-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971428..1982024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISD32_RS09685 helD 1971636..1973690 (-) 2055 WP_016160584.1 DNA helicase IV -
  ISD32_RS09690 - 1973815..1974261 (+) 447 WP_012542294.1 YccF domain-containing protein -
  ISD32_RS09695 yccS 1974279..1976414 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ISD32_RS09700 sxy/tfoX 1976428..1977024 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ISD32_RS09705 sulA 1977375..1977884 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ISD32_RS09710 ompA 1978237..1979289 (+) 1053 WP_008805892.1 porin OmpA -
  ISD32_RS09715 matP 1979400..1979852 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ISD32_RS09720 - 1980038..1981795 (+) 1758 WP_032729888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=497204 ISD32_RS09700 WP_012542296.1 1976428..1977024(-) (sxy/tfoX) [Klebsiella variicola strain M142-3]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497204 ISD32_RS09700 WP_012542296.1 1976428..1977024(-) (sxy/tfoX) [Klebsiella variicola strain M142-3]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505