Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD48_RS24865 Genome accession   NZ_CP063865
Coordinates   5091401..5091997 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain S130-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5086401..5096997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD48_RS24845 - 5086593..5088350 (-) 1758 WP_004191101.1 Lon protease family protein -
  IOD48_RS24850 matP 5088536..5088988 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD48_RS24855 ompA 5089120..5090190 (-) 1071 WP_002898408.1 porin OmpA -
  IOD48_RS24860 sulA 5090543..5091052 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  IOD48_RS24865 sxy/tfoX 5091401..5091997 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD48_RS24870 yccS 5092011..5094146 (-) 2136 WP_002898422.1 YccS family putative transporter -
  IOD48_RS24875 - 5094164..5094610 (-) 447 WP_002898425.1 YccF domain-containing protein -
  IOD48_RS24880 helD 5094735..5096789 (+) 2055 WP_004176653.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497200 IOD48_RS24865 WP_004179217.1 5091401..5091997(+) (sxy/tfoX) [Klebsiella pneumoniae strain S130-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497200 IOD48_RS24865 WP_004179217.1 5091401..5091997(+) (sxy/tfoX) [Klebsiella pneumoniae strain S130-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51