Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD47_RS23880 Genome accession   NZ_CP063863
Coordinates   4914748..4915344 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain M63-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4909748..4920344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD47_RS23865 helD 4909956..4912010 (-) 2055 WP_032414747.1 DNA helicase IV -
  IOD47_RS23870 - 4912135..4912581 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IOD47_RS23875 yccS 4912599..4914734 (+) 2136 WP_032414745.1 YccS family putative transporter -
  IOD47_RS23880 sxy/tfoX 4914748..4915344 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD47_RS23885 sulA 4915693..4916202 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD47_RS23890 ompA 4916555..4917625 (+) 1071 WP_002898408.1 porin OmpA -
  IOD47_RS23895 matP 4917757..4918209 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD47_RS23900 - 4918395..4920152 (+) 1758 WP_032414743.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=497176 IOD47_RS23880 WP_004150836.1 4914748..4915344(-) (sxy/tfoX) [Klebsiella pneumoniae strain M63-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497176 IOD47_RS23880 WP_004150836.1 4914748..4915344(-) (sxy/tfoX) [Klebsiella pneumoniae strain M63-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51