Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD46_RS22755 Genome accession   NZ_CP063858
Coordinates   4705633..4706229 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M1026-3Ar     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4700633..4711229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD46_RS22735 - 4700825..4702582 (-) 1758 WP_194315385.1 Lon protease family protein -
  IOD46_RS22740 matP 4702768..4703220 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD46_RS22745 ompA 4703352..4704422 (-) 1071 WP_002898408.1 porin OmpA -
  IOD46_RS22750 sulA 4704775..4705284 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD46_RS22755 sxy/tfoX 4705633..4706229 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD46_RS22760 yccS 4706243..4708378 (-) 2136 WP_002898422.1 YccS family putative transporter -
  IOD46_RS22765 - 4708396..4708842 (-) 447 WP_021312905.1 YccF domain-containing protein -
  IOD46_RS22770 helD 4708967..4711021 (+) 2055 WP_194315384.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497152 IOD46_RS22755 WP_004179217.1 4705633..4706229(+) (sxy/tfoX) [Klebsiella pneumoniae strain M1026-3Ar]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497152 IOD46_RS22755 WP_004179217.1 4705633..4706229(+) (sxy/tfoX) [Klebsiella pneumoniae strain M1026-3Ar]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCAAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51