Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD44_RS09605 Genome accession   NZ_CP063856
Coordinates   1948748..1949344 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain N1059-5At     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1943748..1954344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD44_RS09590 helD 1943956..1946010 (-) 2055 WP_101987051.1 DNA helicase IV -
  IOD44_RS09595 - 1946135..1946581 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IOD44_RS09600 yccS 1946599..1948734 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IOD44_RS09605 sxy/tfoX 1948748..1949344 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD44_RS09610 sulA 1949693..1950202 (+) 510 WP_200973348.1 SOS-induced cell division inhibitor SulA -
  IOD44_RS09615 ompA 1950555..1951625 (+) 1071 WP_002898408.1 porin OmpA -
  IOD44_RS09620 matP 1951758..1952210 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD44_RS09625 - 1952396..1954153 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497108 IOD44_RS09605 WP_004179217.1 1948748..1949344(-) (sxy/tfoX) [Klebsiella pneumoniae strain N1059-5At]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497108 IOD44_RS09605 WP_004179217.1 1948748..1949344(-) (sxy/tfoX) [Klebsiella pneumoniae strain N1059-5At]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51