Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD43_RS03695 Genome accession   NZ_CP063851
Coordinates   733616..734212 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M1023-4Ar     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 728616..739212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD43_RS03680 helD 728824..730878 (-) 2055 WP_194315384.1 DNA helicase IV -
  IOD43_RS03685 - 731003..731449 (+) 447 WP_021312905.1 YccF domain-containing protein -
  IOD43_RS03690 yccS 731467..733602 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IOD43_RS03695 sxy/tfoX 733616..734212 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD43_RS03700 sulA 734561..735070 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD43_RS03705 ompA 735423..736493 (+) 1071 WP_002898408.1 porin OmpA -
  IOD43_RS03710 matP 736625..737077 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD43_RS03715 - 737263..739020 (+) 1758 WP_194315385.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=497081 IOD43_RS03695 WP_004179217.1 733616..734212(-) (sxy/tfoX) [Klebsiella pneumoniae strain M1023-4Ar]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=497081 IOD43_RS03695 WP_004179217.1 733616..734212(-) (sxy/tfoX) [Klebsiella pneumoniae strain M1023-4Ar]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCAAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51