Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ISF26_RS09405 Genome accession   NZ_CP063845
Coordinates   1922919..1924361 (-) Length   480 a.a.
NCBI ID   WP_230843634.1    Uniprot ID   -
Organism   Gloeobacter morelensis MG652769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917919..1929361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISF26_RS09375 (ISF26_09315) - 1918569..1918928 (-) 360 WP_230843629.1 hypothetical protein -
  ISF26_RS09380 (ISF26_09320) - 1919257..1919457 (+) 201 WP_230844220.1 DUF4070 domain-containing protein -
  ISF26_RS09385 (ISF26_09325) - 1919461..1920435 (-) 975 WP_230843630.1 orange carotenoid protein N-terminal domain-containing protein -
  ISF26_RS09390 (ISF26_09330) pcp 1921040..1921693 (-) 654 WP_230843631.1 pyroglutamyl-peptidase I -
  ISF26_RS09395 (ISF26_09335) - 1921697..1922386 (-) 690 WP_230843632.1 uracil-DNA glycosylase -
  ISF26_RS09400 (ISF26_09340) - 1922419..1922853 (-) 435 WP_230843633.1 ATP-binding protein -
  ISF26_RS09405 (ISF26_09345) radA 1922919..1924361 (-) 1443 WP_230843634.1 DNA repair protein RadA Machinery gene
  ISF26_RS09410 (ISF26_09350) recF 1924630..1925757 (+) 1128 WP_230843635.1 DNA replication/repair protein RecF -
  ISF26_RS09415 (ISF26_09355) - 1925777..1926547 (-) 771 WP_230840453.1 energy transducer TonB -
  ISF26_RS09420 (ISF26_09360) - 1926510..1926929 (-) 420 WP_230843636.1 ExbD/TolR family protein -
  ISF26_RS09425 (ISF26_09365) - 1926926..1927561 (-) 636 WP_230840455.1 MotA/TolQ/ExbB proton channel family protein -
  ISF26_RS09430 (ISF26_09370) psaM 1927792..1927896 (+) 105 WP_230843637.1 photosystem I reaction center subunit XII -
  ISF26_RS09435 (ISF26_09375) - 1927906..1928256 (+) 351 WP_230843638.1 hypothetical protein -
  ISF26_RS09440 (ISF26_09380) - 1928253..1929278 (-) 1026 WP_230843639.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 50820.29 Da        Isoelectric Point: 6.6089

>NTDB_id=497060 ISF26_RS09405 WP_230843634.1 1922919..1924361(-) (radA) [Gloeobacter morelensis MG652769]
MAKTRSQFTCTECGYENVRWLGRCPGCDAWNSFVEQTVSPTPAAHRSPAAAAARPRAAVALDAIDQSQHSRVPSGFGELD
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQTACRLSQAQTVLYVAAEESAQQVKLRAERLGVAAPGLFLLAETELEAVLGE
LESLKPAIAVVDSIQAVYLGALTAAAGSVSQVRECTASLMRLAKRTRITLFIVGHVTKEGSLAGPKVLEHLVDTVLYFEG
DRFQSHRLLRSVKNRFGATHEIGVFEMGERGLAEVENPSELFLTSRDEPAPGTATIVACEGTRPLVVELQALVSPTSYGS
PRRTATGIEYNRFLQILAVLEKRVGIPLSKLDAYVASVGGLDVSEPAADLGVAVAVAASFRDRIVDPHTVLLGEVGLGGQ
VRPVSQLELRLKEAFKLGYRRAIVPRGSVVGMPGMEIVPVSRVVEALVAALGGPPKPTSAGSNPPEETDVPRPESDFQKS

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=497060 ISF26_RS09405 WP_230843634.1 1922919..1924361(-) (radA) [Gloeobacter morelensis MG652769]
ATGGCCAAGACGCGCAGCCAGTTCACCTGCACCGAGTGCGGCTACGAAAACGTCCGCTGGTTGGGGCGCTGCCCCGGCTG
CGACGCCTGGAACAGCTTTGTCGAGCAGACCGTCTCCCCGACCCCGGCTGCTCACCGCTCCCCCGCCGCGGCTGCGGCGC
GGCCGCGCGCCGCCGTCGCCCTCGACGCCATCGACCAGAGTCAGCACAGTCGCGTCCCTTCGGGGTTCGGTGAACTGGAC
CGGGTACTTGGCGGCGGTGTGGTGCCAGGCTCGCTGGTGCTCATCGGCGGCGATCCGGGAATCGGCAAATCGACGCTGCT
GCTGCAGACCGCCTGTCGGCTTTCGCAAGCGCAAACGGTGCTCTACGTCGCCGCCGAGGAATCGGCCCAGCAGGTGAAAT
TGCGCGCCGAACGGCTGGGGGTGGCGGCGCCGGGGCTCTTTTTGCTGGCGGAGACCGAGCTTGAGGCGGTGCTGGGCGAA
CTGGAGAGCCTCAAGCCCGCTATTGCTGTTGTCGATTCGATCCAGGCGGTCTATCTGGGGGCGCTCACCGCCGCCGCCGG
TTCGGTCTCCCAGGTGCGCGAGTGCACCGCTTCGCTGATGCGCCTGGCCAAGCGCACCCGCATCACACTGTTTATCGTCG
GGCACGTCACCAAAGAAGGATCCCTCGCCGGACCCAAGGTGCTCGAACACCTGGTCGATACGGTGCTCTACTTCGAAGGC
GACCGCTTCCAGAGCCATCGTTTGCTGCGCTCGGTCAAAAACCGCTTCGGAGCCACCCACGAAATCGGTGTCTTCGAGAT
GGGCGAGCGGGGTCTGGCGGAGGTCGAAAATCCGTCGGAATTGTTTTTGACCAGCCGCGACGAACCCGCCCCCGGCACCG
CCACGATCGTCGCCTGCGAGGGCACCCGGCCCCTGGTCGTCGAACTGCAGGCCCTGGTGAGCCCCACCAGCTACGGCTCG
CCGCGCCGCACCGCCACCGGCATCGAGTACAACCGCTTCCTGCAGATCCTGGCGGTCCTCGAAAAGCGCGTCGGCATTCC
CCTCTCCAAACTCGATGCCTACGTCGCCTCGGTGGGGGGGCTCGACGTCTCCGAACCCGCCGCCGATCTGGGGGTGGCCG
TCGCGGTGGCCGCCAGTTTCCGCGATCGCATCGTCGATCCGCACACGGTGCTGTTGGGTGAGGTCGGCCTGGGTGGTCAG
GTGCGCCCTGTCTCCCAACTGGAACTGCGCCTCAAAGAAGCCTTCAAACTCGGCTACCGTCGGGCGATCGTGCCGCGCGG
TTCGGTAGTGGGCATGCCGGGCATGGAAATCGTACCGGTATCGCGGGTCGTCGAGGCGCTGGTGGCTGCCCTCGGTGGAC
CGCCCAAGCCCACCTCAGCAGGGAGTAATCCTCCTGAAGAGACAGATGTCCCCCGCCCGGAGAGCGACTTTCAGAAATCT
TAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.275

95.417

0.508
  radA Streptococcus mitis SK321

51.441

93.958

0.483
  radA Streptococcus pneumoniae Rx1

50.554

93.958

0.475
  radA Streptococcus pneumoniae D39

50.554

93.958

0.475
  radA Streptococcus pneumoniae R6

50.554

93.958

0.475
  radA Streptococcus pneumoniae TIGR4

50.554

93.958

0.475
  radA Streptococcus mitis NCTC 12261

50.554

93.958

0.475